PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g02929.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 188aa    MW: 20756 Da    PI: 10.6715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g02929.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-12556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT+eE+  l+ +v ++G+g W+tI +          R+  ++k++w+++
  Peaxi162Scf00016g02929.1  5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPEfigvlYMRSNVDLKDKWRNL 56
                              79****************************99999**99***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.506161IPR017930Myb domain
SuperFamilySSF466895.46E-16270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-14456IPR009057Homeodomain-like
SMARTSM007179.1E-6459IPR001005SANT/Myb domain
PfamPF002494.3E-9556IPR001005SANT/Myb domain
CDDcd116604.03E-19656No hitNo description
SuperFamilySSF467855.33E-15117179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.6E-13117182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.6E-14118179IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.619119188IPR005818Linker histone H1/H5, domain H15
PfamPF005388.7E-9124179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPEFIGV LYMRSNVDLK DKWRNLSVMA  60
SGWGSREKAR LALKRMNQAR KQDESSLAVS VAQSDGEVAE ARLATTSSGS PQIGGSKRSI  120
IRLDNLIMEA ISNLKEPGGS NKTTIASYIE DQYWAPPNFK RLLSAKLKYL AASGRLIKVI  180
SVLQFTLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331352e-55AC233135.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-92h13 map 1, complete sequence.
GenBankHG9754402e-55HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755132e-55HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501293.11e-115PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016501292.11e-115PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK45e-84TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1CF221e-109M1CF22_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661341e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-77telomere repeat binding factor 1